independenceTest_tpl.h

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/***************************************************************************
 *   Copyright (C) 2005 by Christophe GONZALES and Pierre-Henri WUILLEMIN  *
 *   {prenom.nom}_at_lip6.fr                                               *
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU General Public License as published by  *
 *   the Free Software Foundation; either version 2 of the License, or     *
 *   (at your option) any later version.                                   *
 *                                                                         *
 *   This program is distributed in the hope that it will be useful,       *
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of        *
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
 *   GNU General Public License for more details.                          *
 *                                                                         *
 *   You should have received a copy of the GNU General Public License     *
 *   along with this program; if not, write to the                         *
 *   Free Software Foundation, Inc.,                                       *
 *   59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.             *
 ***************************************************************************/
#ifndef DOXYGEN_SHOULD_SKIP_THIS

namespace gum {

  namespace learning {

    template < template < typename > class ALLOC >
    INLINE typename IndependenceTest< ALLOC >::allocator_type
       IndependenceTest< ALLOC >::getAllocator() const {
      return _counter.getAllocator();
    }


    template < template < typename > class ALLOC >
    INLINE IndependenceTest< ALLOC >::IndependenceTest(
       const DBRowGeneratorParser< ALLOC >& parser,
       const Apriori< ALLOC >&              apriori,
       const std::vector< std::pair< std::size_t, std::size_t >,
                          ALLOC< std::pair< std::size_t, std::size_t > > >& ranges,
       const Bijection< NodeId, std::size_t, ALLOC< std::size_t > >&
                                                                 nodeId2columns,
       const typename IndependenceTest< ALLOC >::allocator_type& alloc) :
        _apriori(apriori.clone(alloc)),
        _counter(parser, ranges, nodeId2columns, alloc), _cache(alloc) {
      GUM_CONSTRUCTOR(IndependenceTest);
    }


    template < template < typename > class ALLOC >
    INLINE IndependenceTest< ALLOC >::IndependenceTest(
       const DBRowGeneratorParser< ALLOC >& parser,
       const Apriori< ALLOC >&              apriori,
       const Bijection< NodeId, std::size_t, ALLOC< std::size_t > >&
                                                                 nodeId2columns,
       const typename IndependenceTest< ALLOC >::allocator_type& alloc) :
        _apriori(apriori.clone(alloc)),
        _counter(parser, nodeId2columns, alloc), _cache(alloc) {
      GUM_CONSTRUCTOR(IndependenceTest);
    }


    template < template < typename > class ALLOC >
    INLINE IndependenceTest< ALLOC >::IndependenceTest(
       const IndependenceTest< ALLOC >&                          from,
       const typename IndependenceTest< ALLOC >::allocator_type& alloc) :
        _apriori(from._apriori->clone(alloc)),
        _counter(from._counter, alloc), _cache(from._cache, alloc),
        _use_cache(from._use_cache) {
      GUM_CONS_CPY(IndependenceTest);
    }


    template < template < typename > class ALLOC >
    INLINE IndependenceTest< ALLOC >::IndependenceTest(
       const IndependenceTest< ALLOC >& from) :
        IndependenceTest(from, from.getAllocator()) {}


    template < template < typename > class ALLOC >
    INLINE IndependenceTest< ALLOC >::IndependenceTest(
       IndependenceTest< ALLOC >&&                               from,
       const typename IndependenceTest< ALLOC >::allocator_type& alloc) :
        _apriori(from._apriori),
        _counter(std::move(from._counter), alloc),
        _cache(std::move(from._cache), alloc), _use_cache(from._use_cache) {
      from._apriori = nullptr;
      GUM_CONS_MOV(IndependenceTest);
    }


    template < template < typename > class ALLOC >
    INLINE IndependenceTest< ALLOC >::IndependenceTest(
       IndependenceTest< ALLOC >&& from) :
        IndependenceTest(std::move(from), from.getAllocator()) {}


    template < template < typename > class ALLOC >
    INLINE IndependenceTest< ALLOC >::~IndependenceTest() {
      if (_apriori != nullptr) {
        ALLOC< Apriori< ALLOC > > allocator(this->getAllocator());
        allocator.destroy(_apriori);
        allocator.deallocate(_apriori, 1);
      }
      GUM_DESTRUCTOR(IndependenceTest);
    }


    template < template < typename > class ALLOC >
    IndependenceTest< ALLOC >& IndependenceTest< ALLOC >::
                               operator=(const IndependenceTest< ALLOC >& from) {
      if (this != &from) {
        Apriori< ALLOC >*      new_apriori = from._apriori->clone();
        RecordCounter< ALLOC > new_counter = from._counter;
        ScoringCache< ALLOC >  new_cache = from._cache;

        if (_apriori != nullptr) {
          ALLOC< Apriori< ALLOC > > allocator(this->getAllocator());
          allocator.destroy(_apriori);
          allocator.deallocate(_apriori, 1);
        }

        _apriori = new_apriori;
        _counter = std::move(new_counter);
        _cache = std::move(new_cache);

        _use_cache = from._use_cache;
      }
      return *this;
    }


    template < template < typename > class ALLOC >
    IndependenceTest< ALLOC >& IndependenceTest< ALLOC >::
                               operator=(IndependenceTest< ALLOC >&& from) {
      if (this != &from) {
        std::swap(_apriori, from._apriori);

        _counter = std::move(from._counter);
        _cache = std::move(from._cache);
        _use_cache = from._use_cache;
      }
      return *this;
    }


    template < template < typename > class ALLOC >
    INLINE void IndependenceTest< ALLOC >::setMaxNbThreads(std::size_t nb) const {
      _counter.setMaxNbThreads(nb);
    }


    template < template < typename > class ALLOC >
    INLINE std::size_t IndependenceTest< ALLOC >::nbThreads() const {
      return _counter.nbThreads();
    }


    template < template < typename > class ALLOC >
    INLINE void IndependenceTest< ALLOC >::setMinNbRowsPerThread(
       const std::size_t nb) const {
      _counter.setMinNbRowsPerThread(nb);
    }


    template < template < typename > class ALLOC >
    INLINE std::size_t IndependenceTest< ALLOC >::minNbRowsPerThread() const {
      return _counter.minNbRowsPerThread();
    }



    template < template < typename > class ALLOC >
    template < template < typename > class XALLOC >
    void IndependenceTest< ALLOC >::setRanges(
       const std::vector< std::pair< std::size_t, std::size_t >,
                          XALLOC< std::pair< std::size_t, std::size_t > > >&
          new_ranges) {
      std::vector< std::pair< std::size_t, std::size_t >,
                   ALLOC< std::pair< std::size_t, std::size_t > > >
         old_ranges = ranges();
      _counter.setRanges(new_ranges);
      if (old_ranges != ranges()) clear();
    }


    template < template < typename > class ALLOC >
    void IndependenceTest< ALLOC >::clearRanges() {
      std::vector< std::pair< std::size_t, std::size_t >,
                   ALLOC< std::pair< std::size_t, std::size_t > > >
         old_ranges = ranges();
      _counter.clearRanges();
      if (old_ranges != ranges()) clear();
    }


    template < template < typename > class ALLOC >
    INLINE const std::vector< std::pair< std::size_t, std::size_t >,
                              ALLOC< std::pair< std::size_t, std::size_t > > >&
                 IndependenceTest< ALLOC >::ranges() const {
      return _counter.ranges();
    }


    template < template < typename > class ALLOC >
    INLINE double IndependenceTest< ALLOC >::score(const NodeId var1,
                                                   const NodeId var2) {
      IdSet< ALLOC > idset(
         var1, var2, _empty_ids, false, true, this->getAllocator());
      if (_use_cache) {
        try {
          return _cache.score(idset);
        } catch (NotFound&) {}
        double the_score = _score(idset);
        _cache.insert(std::move(idset), the_score);
        return the_score;
      } else {
        return _score(std::move(idset));
      }
    }


    template < template < typename > class ALLOC >
    INLINE double IndependenceTest< ALLOC >::score(
       const NodeId                                  var1,
       const NodeId                                  var2,
       const std::vector< NodeId, ALLOC< NodeId > >& rhs_ids) {
      IdSet< ALLOC > idset(
         var1, var2, rhs_ids, false, false, this->getAllocator());
      if (_use_cache) {
        try {
          return _cache.score(idset);
        } catch (NotFound&) {}
        double the_score = _score(idset);
        _cache.insert(std::move(idset), the_score);
        return the_score;
      } else {
        return _score(idset);
      }
    }


    template < template < typename > class ALLOC >
    INLINE void IndependenceTest< ALLOC >::clear() {
      _counter.clear();
      _cache.clear();
    }


    template < template < typename > class ALLOC >
    INLINE void IndependenceTest< ALLOC >::clearCache() {
      _cache.clear();
    }


    template < template < typename > class ALLOC >
    INLINE void IndependenceTest< ALLOC >::useCache(const bool on_off) {
      _use_cache = on_off;
    }


    template < template < typename > class ALLOC >
    INLINE const Bijection< NodeId, std::size_t, ALLOC< std::size_t > >&
                 IndependenceTest< ALLOC >::nodeId2Columns() const {
      return _counter.nodeId2Columns();
    }


    template < template < typename > class ALLOC >
    INLINE const DatabaseTable< ALLOC >&
                 IndependenceTest< ALLOC >::database() const {
      return _counter.database();
    }



    template < template < typename > class ALLOC >
    std::vector< double, ALLOC< double > > IndependenceTest< ALLOC >::_marginalize(
       const std::size_t                             node_2_marginalize,
       const std::size_t                             X_size,
       const std::size_t                             Y_size,
       const std::size_t                             Z_size,
       const std::vector< double, ALLOC< double > >& N_xyz) const {
      // determine the size of the output vector
      std::size_t out_size = Z_size;
      if (node_2_marginalize == std::size_t(0))
        out_size *= Y_size;
      else if (node_2_marginalize == std::size_t(1))
        out_size *= X_size;

      // allocate the output vector
      std::vector< double, ALLOC< double > > res(out_size, 0.0);

      // fill the vector:
      if (node_2_marginalize == std::size_t(0)) {   // marginalize X
        for (std::size_t yz = std::size_t(0), xyz = std::size_t(0); yz < out_size;
             ++yz) {
          for (std::size_t x = std::size_t(0); x < X_size; ++x, ++xyz) {
            res[yz] += N_xyz[xyz];
          }
        }
      } else if (node_2_marginalize == std::size_t(1)) {   // marginalize Y
        for (std::size_t z = std::size_t(0),
                         xyz = std::size_t(0),
                         beg_xz = std::size_t(0);
             z < Z_size;
             ++z, beg_xz += X_size) {
          for (std::size_t y = std::size_t(0); y < Y_size; ++y) {
            for (std::size_t x = std::size_t(0), xz = beg_xz; x < X_size;
                 ++x, ++xz, ++xyz) {
              res[xz] += N_xyz[xyz];
            }
          }
        }
      } else if (node_2_marginalize == std::size_t(2)) {   // marginalize X and Y
        const std::size_t XY_size = X_size * Y_size;
        for (std::size_t z = std::size_t(0), xyz = std::size_t(0); z < out_size;
             ++z) {
          for (std::size_t xy = std::size_t(0); xy < XY_size; ++xy, ++xyz) {
            res[z] += N_xyz[xyz];
          }
        }
      } else {
        GUM_ERROR(NotImplementedYet,
                  "_marginalize not implemented for nodeset "
                     << node_2_marginalize);
      }

      return res;
    }

  } /* namespace learning */

} /* namespace gum */

#endif /* DOXYGEN_SHOULD_SKIP_THIS */