O3prmBNReader_tpl.h

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// to ease Parser
#include <agrum/PRM/o3prm/O3prmBNReader.h>

namespace gum {
  template < typename GUM_SCALAR >
  INLINE std::string
         O3prmBNReader< GUM_SCALAR >::__getVariableName(const std::string& path,
                                                    const std::string& type,
                                                    const std::string& name,
                                                    const std::string& toRemove) {
    auto res = path + name;   // path ends up with a "."
    if (toRemove != "") {
      if (res.substr(0, toRemove.size()) == toRemove) {
        res = res.substr(toRemove.size());
      }
    }
    return res;
  }

  template < typename GUM_SCALAR >
  std::string
     O3prmBNReader< GUM_SCALAR >::__getInstanceName(const std::string& classname) {
    auto res = classname.substr(0, 4);
    std::transform(res.begin(), res.end(), res.begin(), ::tolower);
    return res;
  }

  template < typename GUM_SCALAR >
  std::string
     O3prmBNReader< GUM_SCALAR >::__getEntityName(const std::string& filename) {
    auto b = filename.find_last_of("/\\");
    auto e = filename.find_last_of(".") - 1;
    GUM_ASSERT(e > b);   // we are waiting ../../basename.o3prm
    return filename.substr(b + 1, e - b);
  }

  template < typename GUM_SCALAR >
  O3prmBNReader< GUM_SCALAR >::O3prmBNReader(BayesNet< GUM_SCALAR >* bn,
                                             const std::string&      filename,
                                             const std::string&      entityName,
                                             const std::string&      classpath) :
      BNReader< GUM_SCALAR >(bn, filename) {
    GUM_CONSTRUCTOR(O3prmBNReader);
    __bn = bn;
    __filename = filename;
    __entityName = entityName == "" ? __getEntityName(filename) : entityName;
    __classpath = classpath;
  }

  template < typename GUM_SCALAR >
  O3prmBNReader< GUM_SCALAR >::~O3prmBNReader() {
    GUM_DESTRUCTOR(O3prmBNReader);
  }

  template < typename GUM_SCALAR >
  Size O3prmBNReader< GUM_SCALAR >::proceed() {
    prm::o3prm::O3prmReader< GUM_SCALAR > reader;
    if (__classpath != "") { reader.addClassPath(__classpath); }
    reader.readFile(__filename);
    gum::prm::PRM< GUM_SCALAR >* prm = reader.prm();
    __errors = reader.errorsContainer();


    if (errors() == 0) {
      std::string instanceName = "";
      if (prm->isSystem(__entityName)) {
        __generateBN(prm->getSystem(__entityName));
      } else {
        if (prm->isClass(__entityName)) {
          ParseError warn(
             false,
             "No system '" + __entityName
                + "' found but class found. Generating unnamed instance.",
             __filename,
             0);
          __errors.add(warn);
          gum::prm::PRMSystem< GUM_SCALAR > s("S_" + __entityName);
          instanceName = __getInstanceName(__entityName);
          auto i = new gum::prm::PRMInstance< GUM_SCALAR >(
             instanceName, prm->getClass(__entityName));
          s.add(i);
          __generateBN(s);
          instanceName += ".";   // to be removed in __getVariableName
        } else {
          ParseError err(true,
                         "Neither system nor class '" + __entityName + "'.",
                         __filename,
                         0);
          __errors.add(err);
        }
      }

      // renaming variables in th BN

      gum::Set< std::string > names;
      for (auto node : __bn->nodes()) {
        // keeping the complete name in description
        const std::string& nn = __bn->variable(node).name();
        __bn->variable(node).setDescription(nn);

        // trying to simplify the
        auto start = nn.find_first_of('(');
        auto end = nn.find_first_of(')');
        if (0 < start && start < end && end < nn.size()) {
          auto path = nn.substr(0, start);
          auto type = nn.substr(start + 1, end - start - 1);
          auto name = nn.substr(end + 1, std::string::npos);

          std::string newNameRadical =
             __getVariableName(path, type, name, instanceName);

          std::string newName = newNameRadical;
          // forcing newName to be unique
          int num = 0;
          while (names.contains(newName)) {
            newName = newNameRadical + std::to_string(++num);
          }

          names.insert(newName);
          __bn->changeVariableName(node, newName);
        } else {
          ParseError warn(
             false, "Name " + nn + " cannot be simplified.", __filename, 0);
          __errors.add(warn);
        }
      }
    }

    delete prm;

    return errors();
  }


  template < typename GUM_SCALAR >
  void O3prmBNReader< GUM_SCALAR >::__generateBN(
     prm::PRMSystem< GUM_SCALAR >& system) {
    system.instantiate();
    BayesNetFactory< GUM_SCALAR > factory(__bn);
    system.groundedBN(factory);
  }
}   // namespace gum