gum::CliqueGraph Class Reference

Basic graph of cliques. More...

#include <cliqueGraph.h>

Inheritance diagram for gum::CliqueGraph:

Collaboration diagram for gum::CliqueGraph:

Public Attributes
Signaler1< NodeId >	onNodeAdded
Signaler1< NodeId >	onNodeDeleted
Signaler2< NodeId, NodeId >	onEdgeAdded
Signaler2< NodeId, NodeId >	onEdgeDeleted

Public Member Functions
Constructors / Destructors
	CliqueGraph (Size nodes_size=HashTableConst::default_size, bool nodes_resize_policy=true, Size edges_size=HashTableConst::default_size, bool edges_resize_policy=true)
	basic constructor: creates an empty clique graph More...
	CliqueGraph (const CliqueGraph &from)
	copy constructor More...
virtual	~CliqueGraph ()
	destructor More...
Accessors/Modifiers
virtual void	addEdge (const NodeId first, const NodeId second)
	inserts a new edge between two cliques More...
virtual void	eraseEdge (const Edge &edge)
	removes an edge (and its separator) from the clique graph More...
virtual void	clearEdges ()
	removes all edges and their separators More...
NodeId	addNode (const NodeSet &clique)
	adds a new clique to the graph More...
virtual NodeId	addNode ()
	adds a new clique to the graph More...
virtual void	addNode (const NodeId id, const NodeSet &clique)
	try to add a new clique to the graph More...
virtual void	addNode (const NodeId id)
	try to add a new clique to the graph More...
virtual void	eraseNode (const NodeId node)
	removes a given clique from the clique graph More...
virtual void	clear ()
	removes all the cliques and separators from the graph (as well as their adjacent edges) More...
const NodeSet &	clique (const NodeId idClique) const
	returns the set of nodes included into a given clique More...
NodeId	container (const NodeId idNode) const
	returns the id of a clique containing the node the id of which is in argument More...
virtual void	setClique (const NodeId idClique, const NodeSet &new_clique)
	changes the set of nodes included into a given clique and returns the new set More...
virtual void	addToClique (const NodeId clique_id, const NodeId node_id)
	changes the set of nodes included into a given clique and returns the new set More...
virtual void	eraseFromClique (const NodeId clique_id, const NodeId node_id)
	remove a node from a clique More...
const NodeSet &	separator (const Edge &edge) const
	returns the separator included in a given edge More...
const NodeSet &	separator (const NodeId clique1, const NodeId clique) const
	returns the separator included in an edge specified by its extremities More...
std::vector< NodeId >	containerPath (const NodeId node1, const NodeId node2) const
	returns a path from a clique containing node1 to a clique containing node2 More...
bool	hasRunningIntersection () const
	indicates whether the running intersection property holds More...
bool	isJoinTree () const
	indicates whether the graph is a join tree More...
virtual std::string	toString () const
	friendly displays the content of the CliqueGraph More...
virtual std::string	toDot () const
	friendly displays the content of the CliqueGraph in DOT format More...
Operators
CliqueGraph &	operator= (const CliqueGraph &from)
	copy operator More...
bool	operator!= (const CliqueGraph &from) const
	checks whether two clique graphs are different More...
bool	operator== (const CliqueGraph &from) const
	checks whether two clique graphs are equal More...
Operators
bool	operator== (const UndiGraph &g) const
	tests whether two UndiGraphs are identical (same nodes, same edges) More...
bool	operator!= (const UndiGraph &g) const
	tests whether two UndiGraphs are different More...
Operators
bool	operator== (const NodeGraphPart &p) const
	check whether two NodeGraphParts contain the same nodes More...
bool	operator!= (const NodeGraphPart &p) const
	check whether two NodeGraphParts contain different nodes More...
Operators
bool	operator== (const EdgeGraphPart &p) const
	tests whether two EdgeGraphParts contain the same edges More...
bool	operator!= (const EdgeGraphPart &p) const
	tests whether two EdgeGraphParts contain different edges More...
Accessors/Modifiers
bool	hasUndirectedCycle () const
	checks whether the graph contains cycles More...
virtual UndiGraph	partialUndiGraph (NodeSet nodes)
	returns the partial graph formed by the nodes given in parameter More...
NodeProperty< NodeId >	nodes2ConnectedComponent () const
	returns a property {node:id of connected component} More...
Accessors/Modifiers
void	populateNodes (const NodeGraphPart &s)
	populateNodes clears *this and fills it with the same nodes as "s" More...
template<typename T >
void	populateNodesFromProperty (const NodeProperty< T > &h)
	populateNodesFromProperty clears *this and fills it with the keys of "h" More...
NodeId	nextNodeId () const
	returns a new node id, not yet used by any node More...
std::vector< NodeId >	addNodes (Size n)
	insert n nodes More...
virtual void	addNodeWithId (const NodeId id)
	try to insert a node with the given id More...
bool	existsNode (const NodeId id) const
	returns true iff the NodeGraphPart contains the given nodeId More...
bool	exists (const NodeId id) const
	alias for existsNode More...
bool	emptyNodes () const
	indicates whether there exists nodes in the NodeGraphPart More...
bool	empty () const
	alias for emptyNodes More...
virtual void	clearNodes ()
	remove all the nodes from the NodeGraphPart More...
Size	sizeNodes () const
	returns the number of nodes in the NodeGraphPart More...
Size	size () const
	alias for sizeNodes More...
NodeId	bound () const
	returns a number n such that all node ids are strictly lower than n More...
NodeSet	asNodeSet () const
	returns a copy of the set of nodes represented by the NodeGraphPart More...
const NodeGraphPart &	nodes () const
	return *this as a NodeGraphPart More...
node_iterator_safe	beginSafe () const
	a begin iterator to parse the set of nodes contained in the NodeGraphPart More...
const node_iterator_safe &	endSafe () const noexcept
	the end iterator to parse the set of nodes contained in the NodeGraphPart More...
node_iterator	begin () const noexcept
	a begin iterator to parse the set of nodes contained in the NodeGraphPart More...
const node_iterator &	end () const noexcept
	the end iterator to parse the set of nodes contained in the NodeGraphPart More...
template<typename VAL >
NodeProperty< VAL >	nodesProperty (VAL(*f)(const NodeId &), Size size=0) const
	a method to create a HashTable with key:NodeId and value:VAL More...
template<typename VAL >
NodeProperty< VAL >	nodesProperty (const VAL &a, Size size=0) const
	a method to create a hashMap with key:NodeId and value:VAL More...
template<typename VAL >
List< VAL >	listMapNodes (VAL(*f)(const NodeId &)) const
	a method to create a list of VAL from a set of nodes (using for every nodee, say x, the VAL f(x)) More...
Accessors/Modifiers
bool	existsEdge (const Edge &edge) const
	indicates whether a given edge exists More...
bool	existsEdge (const NodeId n1, const NodeId n2) const
	indicates whether a given edge exists More...
bool	emptyEdges () const
	indicates wether the EdgeGraphPart contains any edge More...
Size	sizeEdges () const
	indicates the number of edges stored within the EdgeGraphPart More...
const EdgeSet &	edges () const
	returns the set of edges stored within the EdgeGraphPart More...
const NodeSet &	neighbours (const NodeId id) const
	returns the set of node neighbours to a given node More...
void	eraseNeighbours (const NodeId id)
	erase all the edges adjacent to a given node More...
void	unvirtualizedEraseNeighbours (const NodeId id)
	same function as eraseNeighbours but without any virtual call to an erase More...
template<typename VAL >
EdgeProperty< VAL >	edgesProperty (VAL(*f)(const Edge &), Size size=0) const
	a method to create a hashMap of VAL from a set of edges (using for every edge, say x, the VAL f(x)) More...
template<typename VAL >
EdgeProperty< VAL >	edgesProperty (const VAL &a, Size size=0) const
	a method to create a hashMap of VAL from a set of edges (using for every edge, say x, the VAL a) More...
template<typename VAL >
List< VAL >	listMapEdges (VAL(*f)(const Edge &)) const
	a method to create a list of VAL from a set of edges (using for every edge, say x, the VAL f(x)) More...
const std::vector< NodeId >	undirectedPath (const NodeId node1, const NodeId node2) const
	returns a possible path from node1 to node2 in the edge set More...
bool	hasUndirectedPath (const NodeId n1, const NodeId n2) const
	return true if n1 and n2 are connected (by an undirected path) in the graph. More...
bool	hasUndirectedPath (const NodeId n1, const NodeId n2, const NodeSet &except) const
	return true if n1 and n2 are connected (by an undirected path not using the nodes of except) in the graph. More...
bool	hasUndirectedPath (const NodeSet &n1, const NodeSet &n2, const NodeSet &except) const
	return true if n1 and n2 are connected (by an undirected path not using the nodes of except) in the graph. More...

Public Types
typedef NodeGraphPartIterator	NodeIterator
typedef NodeGraphPartIterator	NodeConstIterator
typedef NodeGraphPartIteratorSafe	NodeIteratorSafe
typedef NodeGraphPartIteratorSafe	NodeConstIteratorSafe
typedef EdgeSetIterator	EdgeIterator
using	node_iterator = NodeGraphPartIterator
	types for STL compliance More...
using	node_const_iterator = NodeGraphPartIterator
	types for STL compliance More...
using	node_iterator_safe = NodeGraphPartIteratorSafe
	types for STL compliance More...
using	node_const_iterator_safe = NodeGraphPartIteratorSafe
	types for STL compliance More...

Classes
struct	_RunningIntersect_
	structure used for the computation of the running intersection property More...

Detailed Description

Basic graph of cliques.

A CliqueGraph is an undirected graph the nodes of which are Cliques, i.e., sets of NodeIds. Cliques are linked by Edges. These edges contain separators that are actually the intersection of the two Cliques at the extermities of the edge.

Definition at line 57 of file cliqueGraph.h.

Member Typedef Documentation

EdgeIterator

typedef EdgeSetIterator gum::EdgeGraphPart::EdgeIterator

inherited

Definition at line 76 of file edgeGraphPart.h.

node_const_iterator

using gum::NodeGraphPart::node_const_iterator = NodeGraphPartIterator

inherited

types for STL compliance

Definition at line 258 of file nodeGraphPart.h.

node_const_iterator_safe

using gum::NodeGraphPart::node_const_iterator_safe = NodeGraphPartIteratorSafe

inherited

types for STL compliance

Definition at line 260 of file nodeGraphPart.h.

node_iterator

using gum::NodeGraphPart::node_iterator = NodeGraphPartIterator

inherited

types for STL compliance

Definition at line 257 of file nodeGraphPart.h.

node_iterator_safe

using gum::NodeGraphPart::node_iterator_safe = NodeGraphPartIteratorSafe

inherited

types for STL compliance

Definition at line 259 of file nodeGraphPart.h.

NodeConstIterator

typedef NodeGraphPartIterator gum::NodeGraphPart::NodeConstIterator

inherited

Definition at line 267 of file nodeGraphPart.h.

NodeConstIteratorSafe

typedef NodeGraphPartIteratorSafe gum::NodeGraphPart::NodeConstIteratorSafe

inherited

Definition at line 269 of file nodeGraphPart.h.

NodeIterator

typedef NodeGraphPartIterator gum::NodeGraphPart::NodeIterator

inherited

Definition at line 266 of file nodeGraphPart.h.

NodeIteratorSafe

typedef NodeGraphPartIteratorSafe gum::NodeGraphPart::NodeIteratorSafe

inherited

Definition at line 268 of file nodeGraphPart.h.

Constructor & Destructor Documentation

CliqueGraph() [1/2]

gum::CliqueGraph::CliqueGraph ( Size  nodes_size = HashTableConst::default_size, bool  nodes_resize_policy = true, Size  edges_size = HashTableConst::default_size, bool  edges_resize_policy = true  )

explicit

basic constructor: creates an empty clique graph

Parameters

nodes_size	the size of the hash table used to store all the nodes
nodes_resize_policy	the resizing policy of this hash table
edges_size	the size of the hash table used to store all the edges
edges_resize_policy	the resizing policy of this hash table

CliqueGraph() [2/2]

gum::CliqueGraph::CliqueGraph

(

const CliqueGraph &

from

)

copy constructor

Parameters

from	the CliqueGraph that will be copied into this

~CliqueGraph()

virtual gum::CliqueGraph::~CliqueGraph ( )

virtual

destructor

Member Function Documentation

_runningIntersectionDFS_()

bool gum::CliqueGraph::_runningIntersectionDFS_ ( const NodeId  clique, const NodeId  from, _RunningIntersect_ &  infos_DFS  ) const

private

function used for the computation of the running intersection property

_updateSeparators_()

void gum::CliqueGraph::_updateSeparators_ ( const NodeId  clique1 )

private

function used to update the separators when a clique is modified

addEdge()

virtual void gum::CliqueGraph::addEdge ( const NodeId  first, const NodeId  second  )

virtual

inserts a new edge between two cliques

Parameters

first	the id of one extremity of the new edge to be inserted
second	the id of the other extremity of the new edge to be inserted

Warning

if the edge already exists, nothing is done. In particular, no exception is raised.

Exceptions

InvalidNode

if first and/or second do not belong to the graph nodes

Reimplemented from gum::EdgeGraphPart.

addNode() [1/4]

NodeId gum::CliqueGraph::addNode

(

const NodeSet &

clique

)

adds a new clique to the graph

Returns

the id chosen for the new clique

addNode() [2/4]

virtual NodeId gum::CliqueGraph::addNode ( )

virtual

adds a new clique to the graph

Returns

the id chosen for the new clique

Reimplemented from gum::NodeGraphPart.

addNode() [3/4]

virtual void gum::CliqueGraph::addNode ( const NodeId  id, const NodeSet &  clique  )

virtual

try to add a new clique to the graph

Exceptions

DuplicateElement

exception is thrown if the id of the clique already exists within the clique graph

addNode() [4/4]

virtual void gum::CliqueGraph::addNode ( const NodeId  id )

virtual

try to add a new clique to the graph

Exceptions

DuplicateElement

exception is thrown if the id of the clique already exists within the clique graph

addNodes()

INLINE std::vector< NodeId > gum::NodeGraphPart::addNodes ( Size  n )

inherited

insert n nodes

Parameters

n	the number of nodes to add

Returns

the vector of chosen ids

Definition at line 256 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                           {
    std::vector< NodeId > v;
    v.reserve(N);
    for (Idx i = 0; i < N; i++)
      v.push_back(this->addNode());
    return v;
  }

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addNodeWithId()

void gum::NodeGraphPart::addNodeWithId ( const NodeId  id )

virtualinherited

try to insert a node with the given id

Warning

This method should be carefully used. Please prefer populateNodes or populateNodesFromProperty when possible

Exceptions

DuplicateElement

exception if the id already exists

Definition at line 131 of file nodeGraphPart.cpp.

References gum::Set< Key, Alloc >::emplace().

                                                   {
    if (id >= _boundVal_) {
      if (id > _boundVal_) {   // we have to add holes
        if (!_holes_) _holes_ = new NodeSet(_holes_size_, _holes_resize_policy_);

        for (NodeId i = _boundVal_; i < id; ++i)
          _holes_->insert(i);
      }

      _boundVal_ = id + 1;

      _updateEndIteratorSafe_();
    } else {
      if (_inHoles_(id)) {   // we fill a hole
        _eraseHole_(id);
      } else {
        GUM_ERROR(DuplicateElement, "Id " << id << " is already used")
      }
    }

    GUM_EMIT1(onNodeAdded, id);
  }

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addToClique()

virtual void gum::CliqueGraph::addToClique ( const NodeId  clique_id, const NodeId  node_id  )

virtual

changes the set of nodes included into a given clique and returns the new set

Exceptions

NotFound	exception is thrown if clique_id does not exist
DuplicateElement	exception is thrown if clique_id set already contains the node

asNodeSet()

INLINE NodeSet gum::NodeGraphPart::asNodeSet ( ) const

inherited

returns a copy of the set of nodes represented by the NodeGraphPart

Warning

this function is o(n) where n is the number of nodes. In space and in time. Usually, when you need to parse the nodes of a NodeGraphPart, prefer using

for(const auto n : nodes()) 

rather than

for(const auto n : asNodeSet()) 

as this is faster and consumes much less memory.

Definition at line 340 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                {
    NodeSet son(sizeNodes());

    if (!empty()) {
      for (NodeId n = 0; n < _boundVal_; ++n) {
        if (!_inHoles_(n)) son.insert(n);
      }
    }

    return son;
  }

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begin()

INLINE NodeGraphPartIterator gum::NodeGraphPart::begin ( ) const

noexceptinherited

a begin iterator to parse the set of nodes contained in the NodeGraphPart

Definition at line 314 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                                   {
    NodeGraphPartIterator it(*this);
    it.validate_();   // stop the iterator at the first not-in-holes
    return it;
  }

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beginSafe()

INLINE NodeGraphPartIteratorSafe gum::NodeGraphPart::beginSafe ( ) const

inherited

a begin iterator to parse the set of nodes contained in the NodeGraphPart

Definition at line 302 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                                  {
    NodeGraphPartIteratorSafe it(*this);
    it.validate_();   // stop the iterator at the first not-in-holes
    return it;
  }

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bound()

INLINE NodeId gum::NodeGraphPart::bound ( ) const

inherited

returns a number n such that all node ids are strictly lower than n

Definition at line 291 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

{ return _boundVal_; }

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clear()

virtual void gum::CliqueGraph::clear ( )

virtual

removes all the cliques and separators from the graph (as well as their adjacent edges)

Reimplemented from gum::NodeGraphPart.

clearEdges()

virtual void gum::CliqueGraph::clearEdges ( )

virtual

removes all edges and their separators

Reimplemented from gum::EdgeGraphPart.

clearNodes()

INLINE void gum::NodeGraphPart::clearNodes ( )

virtualinherited

remove all the nodes from the NodeGraphPart

Definition at line 293 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

{ _clearNodes_(); }

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clique()

const NodeSet& gum::CliqueGraph::clique

(

const NodeId

idClique

)

const

returns the set of nodes included into a given clique

Exceptions

NotFound

exception is raised if the clique does not belong to the clique graph

container()

NodeId gum::CliqueGraph::container

(

const NodeId

idNode

)

const

returns the id of a clique containing the node the id of which is in argument

Warning

note that this method is time consuming as the clique graph does not contain a priori information about which clique could contain idNode. As a consequence, it searches the cliques until it finds one that actually contains idNode.

Exceptions

NotFound

exception is thrown if no clique contains idNode

containerPath()

std::vector< NodeId > gum::CliqueGraph::containerPath	(	const NodeId	node1,
		const NodeId	node2
	)		const

returns a path from a clique containing node1 to a clique containing node2

Exceptions

NotFound

such path cannot be found

edges()

INLINE const EdgeSet & gum::EdgeGraphPart::edges ( ) const

inherited

returns the set of edges stored within the EdgeGraphPart

Definition at line 38 of file edgeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

{ return _edges_; }

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edgesProperty() [1/2]

template<typename VAL >

EdgeProperty< VAL > gum::EdgeGraphPart::edgesProperty ( VAL(*)(const Edge &)  f, Size  size = 0  ) const

inherited

a method to create a hashMap of VAL from a set of edges (using for every edge, say x, the VAL f(x))

Parameters

f	a function assigning a VAL to any edge
size	an optional parameter enabling to fine-tune the returned Property. Roughly speaking, it is a good practice to have a size equal to half the number of edges. If you do not specify this parameter, the method will assign it for you.

edgesProperty() [2/2]

template<typename VAL >

EdgeProperty< VAL > gum::EdgeGraphPart::edgesProperty ( const VAL &  a, Size  size = 0  ) const

inherited

a method to create a hashMap of VAL from a set of edges (using for every edge, say x, the VAL a)

Parameters

a	the default value assigned to each edge in the returned Property
size	an optional parameter enabling to fine-tune the returned Property. Roughly speaking, it is a good practice to have a size equal to half the number of edges. If you do not specify this parameter, the method will assign it for you.

empty()

INLINE bool gum::NodeGraphPart::empty ( ) const

inherited

alias for emptyNodes

Definition at line 289 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

{ return emptyNodes(); }

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emptyEdges()

INLINE bool gum::EdgeGraphPart::emptyEdges ( ) const

inherited

indicates wether the EdgeGraphPart contains any edge

Definition at line 34 of file edgeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

{ return _edges_.empty(); }

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emptyNodes()

INLINE bool gum::NodeGraphPart::emptyNodes ( ) const

inherited

indicates whether there exists nodes in the NodeGraphPart

Definition at line 287 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

{ return (sizeNodes() == 0); }

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end()

INLINE const NodeGraphPartIterator & gum::NodeGraphPart::end ( ) const

noexceptinherited

the end iterator to parse the set of nodes contained in the NodeGraphPart

Definition at line 320 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                                        {
    return _endIteratorSafe_;
  }

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endSafe()

INLINE const NodeGraphPartIteratorSafe & gum::NodeGraphPart::endSafe ( ) const

noexceptinherited

the end iterator to parse the set of nodes contained in the NodeGraphPart

Definition at line 310 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                                                {
    return _endIteratorSafe_;
  }

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eraseEdge()

virtual void gum::CliqueGraph::eraseEdge ( const Edge &  edge )

virtual

removes an edge (and its separator) from the clique graph

Parameters

edge	the edge to be removed

Warning

if the edge does not exist, nothing is done. In particular, no exception is thrown.

Reimplemented from gum::EdgeGraphPart.

eraseFromClique()

virtual void gum::CliqueGraph::eraseFromClique ( const NodeId  clique_id, const NodeId  node_id  )

virtual

remove a node from a clique

If node_id cannot be found in the clique set, then the function does nothing. In particular, it does not throw any exception.

Exceptions

NotFound

exception is thrown if clique_id does not exist

eraseNeighbours()

INLINE void gum::EdgeGraphPart::eraseNeighbours ( const NodeId  id )

inherited

erase all the edges adjacent to a given node

Parameters

id	the node the adjacent edges of which will be removed

Warning

if no edge is adjacent to id, nothing is done. In particular, no exception is thrown.

although this method is not virtual, it calls method eraseEdge( const Edge& edge ) and, as such, has a "virtual" behaviour

Definition at line 79 of file edgeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                            {
    if (_neighbours_.exists(id)) {
      const NodeSet& set = neighbours(id);

      for (auto iter = set.beginSafe(); iter != set.endSafe();
           ++iter) {   // safe iterator needed here
        // warning: use this erase so that you actually use the virtualized
        // edge removal function
        eraseEdge(Edge(*iter, id));
      }
    }
  }

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eraseNode()

virtual void gum::CliqueGraph::eraseNode ( const NodeId  node )

virtual

removes a given clique from the clique graph

If the CliqueGraph does not contain the node, then nothing is done. In particular, no exception is raised.

Reimplemented from gum::NodeGraphPart.

exists()

INLINE bool gum::NodeGraphPart::exists ( const NodeId  id ) const

inherited

alias for existsNode

Definition at line 277 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

{ return existsNode(node); }

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existsEdge() [1/2]

INLINE bool gum::EdgeGraphPart::existsEdge ( const Edge &  edge ) const

inherited

indicates whether a given edge exists

Parameters

edge	the edge we test whether or not it belongs to the EdgeGraphPart

Definition at line 40 of file edgeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

{ return _edges_.contains(edge); }

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existsEdge() [2/2]

INLINE bool gum::EdgeGraphPart::existsEdge ( const NodeId  n1, const NodeId  n2  ) const

inherited

indicates whether a given edge exists

Parameters

n1	the id of one extremity of the edge we test the existence in the EdgeGraphPart
n2	the id of the other extremity of the edge we test the existence in the EdgeGraphPart

Definition at line 42 of file edgeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                                                     {
    return _neighbours_.exists(first) && _neighbours_[first]->exists(second);
  }

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existsNode()

INLINE bool gum::NodeGraphPart::existsNode ( const NodeId  id ) const

inherited

returns true iff the NodeGraphPart contains the given nodeId

Definition at line 271 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                               {
    if (node >= _boundVal_) return false;

    return (!_inHoles_(node));
  }

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hasRunningIntersection()

bool gum::CliqueGraph::hasRunningIntersection

(

)

const

indicates whether the running intersection property holds

The function works properly even if the graph contains cycles.

hasUndirectedCycle()

bool gum::UndiGraph::hasUndirectedCycle ( ) const

inherited

checks whether the graph contains cycles

Definition at line 57 of file undiGraph.cpp.

                                           {
    List< std::pair< NodeId, NodeId > > open_nodes;
    NodeProperty< bool >                examined_nodes = nodesProperty(false);
    std::pair< NodeId, NodeId >         thePair;
    NodeId                              current, from_current;

    for (const auto node: nodes()) {
      // check if the node has already been examined (if this is not the case,
      // this means that we are on a new connected component)
      if (!examined_nodes[node]) {
        // indicates that we are examining a new node
        examined_nodes[node] = true;

        // check recursively all the nodes of node's connected component
        thePair.first  = node;
        thePair.second = node;
        open_nodes.insert(thePair);

        while (!open_nodes.empty()) {
          // get a node to propagate
          thePair = open_nodes.front();
          open_nodes.popFront();

          current      = thePair.first;
          from_current = thePair.second;

          // check the neighbours
          for (const auto new_node: neighbours(current))

            // avoid to check the node we are coming from
            if (new_node != from_current) {
              if (examined_nodes[new_node])
                return true;
              else {
                examined_nodes[new_node] = true;
                thePair.first            = new_node;
                thePair.second           = current;
                open_nodes.insert(thePair);
              }
            }
        }
      }
    }

    return false;
  }

hasUndirectedPath() [1/3]

bool gum::EdgeGraphPart::hasUndirectedPath ( const NodeId  n1, const NodeId  n2  ) const

inherited

return true if n1 and n2 are connected (by an undirected path) in the graph.

Parameters

n1	NodeId
n2	NodeId

Returns

bool

Definition at line 166 of file edgeGraphPart.cpp.

References gum::Set< Key, Alloc >::emplace().

                                                                  {
    NodeSet visited;
    NodeSet temp;

    temp.insert(n1);
    while (!temp.empty()) {
      NodeId current = *(temp.begin());
      if (current == n2) return true;
      temp.erase(current);
      visited.insert(current);
      for (auto next: neighbours(current)) {
        if (!temp.contains(next) && !visited.contains(next)) temp.insert(next);
      }
    }
    return false;
  }

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hasUndirectedPath() [2/3]

bool gum::EdgeGraphPart::hasUndirectedPath ( const NodeId  n1, const NodeId  n2, const NodeSet &  except  ) const

inherited

return true if n1 and n2 are connected (by an undirected path not using the nodes of except) in the graph.

Parameters

n1	NodeId
n2	NodeId
except	NodeSet

Warning

n1 in except has no repercussion. However n2 in except naturally leads to 'false'

Returns

bool

Definition at line 183 of file edgeGraphPart.cpp.

References gum::Set< Key, Alloc >::emplace().

                                                                                               {
    NodeSet visited;
    NodeSet temp;

    if (except.contains(n2)) return false;

    temp.insert(n1);
    while (!temp.empty()) {
      NodeId current = *(temp.begin());
      if (current == n2) return true;
      temp.erase(current);
      visited.insert(current);
      for (auto next: neighbours(current)) {
        if (!temp.contains(next) && !visited.contains(next) && !except.contains(next))
          temp.insert(next);
      }
    }
    return false;
  }

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hasUndirectedPath() [3/3]

bool gum::EdgeGraphPart::hasUndirectedPath ( const NodeSet &  n1, const NodeSet &  n2, const NodeSet &  except  ) const

inherited

return true if n1 and n2 are connected (by an undirected path not using the nodes of except) in the graph.

Parameters

n1	NodeSet
n2	NodeSet
except	NodeSet

Returns

bool

Definition at line 203 of file edgeGraphPart.cpp.

References gum::Set< Key, Alloc >::emplace().

                                                                     {
    NodeSet visited;
    NodeSet temp;

    for (auto n: n1)
      temp.insert(n);

    while (!temp.empty()) {
      NodeId current = *(temp.begin());
      if (n2.contains(current)) return true;
      temp.erase(current);
      visited.insert(current);
      for (auto next: neighbours(current)) {
        if (!temp.contains(next) && !visited.contains(next) && !except.contains(next))
          temp.insert(next);
      }
    }
    return false;
  }

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isJoinTree()

bool gum::CliqueGraph::isJoinTree

(

)

const

indicates whether the graph is a join tree

listMapEdges()

template<typename VAL >

List< VAL > gum::EdgeGraphPart::listMapEdges ( VAL(*)(const Edge &)  f ) const

inherited

a method to create a list of VAL from a set of edges (using for every edge, say x, the VAL f(x))

Parameters

f	a function assigning a VAL to any edge

listMapNodes()

template<typename VAL >

List< VAL > gum::NodeGraphPart::listMapNodes ( VAL(*)(const NodeId &)  f ) const

inherited

a method to create a list of VAL from a set of nodes (using for every nodee, say x, the VAL f(x))

Parameters

f	a function assigning a VAL to any node

neighbours()

INLINE const NodeSet & gum::EdgeGraphPart::neighbours ( const NodeId  id ) const

inherited

returns the set of node neighbours to a given node

Note that the set of nodes returned may be empty if no edge within the EdgeGraphPart is adjacent the given node.

Parameters

id	the node to which the edges are adjacent

Definition at line 74 of file edgeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                                       {
    _checkNeighbours_(id);
    return *(_neighbours_[id]);
  }

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nextNodeId()

INLINE NodeId gum::NodeGraphPart::nextNodeId ( ) const

inherited

returns a new node id, not yet used by any node

Warning

a code like

id=nextNodeId();addNode(id); 

is basically not thread safe !!

Returns

a node id not yet used by any node within the NodeGraphPart

Definition at line 211 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                {
    NodeId next = 0;

    // return the first hole if holes exist
    if (_holes_ && (!_holes_->empty()))
      next = *(_holes_->begin());
    else   // in other case
      next = _boundVal_;

    return next;
  }

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nodes()

INLINE const NodeGraphPart & gum::NodeGraphPart::nodes ( ) const

inherited

return *this as a NodeGraphPart

Definition at line 352 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                         {
    return *(static_cast< const NodeGraphPart* >(this));
  }

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nodes2ConnectedComponent()

NodeProperty< NodeId > gum::UndiGraph::nodes2ConnectedComponent ( ) const

inherited

returns a property {node:id of connected component}

Definition at line 152 of file undiGraph.cpp.

                                                                   {
    NodeProperty< NodeId > res;

    NodeId numCC = 0;
    for (const auto node: nodes()) {
      if (res.exists(node)) continue;
      NodeSet nodes{node};
      while (!nodes.empty()) {
        auto actual = *(nodes.begin());
        nodes.erase(actual);
        res.insert(actual, numCC);
        for (const auto nei: neighbours(actual)) {
          if (!res.exists(nei))
            if (!nodes.exists(nei)) nodes.insert(nei);
        }
      }
      numCC += 1;
    }

    return res;
  }

nodesProperty() [1/2]

template<typename VAL >

NodeProperty< VAL > gum::NodeGraphPart::nodesProperty ( VAL(*)(const NodeId &)  f, Size  size = 0  ) const

inherited

a method to create a HashTable with key:NodeId and value:VAL

VAL are computed from the nodes using for all node x, VAL f(x). This method is a wrapper of the same method in HashTable.

See also

HashTable::map.

Parameters

f	a function assigning a VAL to any node
size	an optional parameter enabling to fine-tune the returned Property. Roughly speaking, it is a good practice to have a size equal to half the number of nodes. If you do not specify this parameter, the method will assign it for you.

nodesProperty() [2/2]

template<typename VAL >

NodeProperty< VAL > gum::NodeGraphPart::nodesProperty ( const VAL &  a, Size  size = 0  ) const

inherited

a method to create a hashMap with key:NodeId and value:VAL

for all nodes, the value stored is a. This method is a wrapper of the same method in HashTable.

See also

HashTable::map.

Parameters

a	the default value assigned to each edge in the returned Property
size	an optional parameter enabling to fine-tune the returned Property. Roughly speaking, it is a good practice to have a size equal to half the number of nodes. If you do not specify this parameter, the method will assign it for you.

operator!=() [1/4]

INLINE bool gum::EdgeGraphPart::operator!= ( const EdgeGraphPart &  p ) const

inherited

tests whether two EdgeGraphParts contain different edges

Parameters

p	the EdgeGraphPart that we compare with this

Definition at line 107 of file edgeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                                    {
    return _edges_ != p._edges_;
  }

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operator!=() [2/4]

INLINE bool gum::UndiGraph::operator!= ( const UndiGraph &  g ) const

inherited

tests whether two UndiGraphs are different

Parameters

g	the UndiGraph with which "this" is compared

Definition at line 69 of file undiGraph_inl.h.

References gum::Set< Key, Alloc >::emplace().

{ return !operator==(p); }

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operator!=() [3/4]

bool gum::CliqueGraph::operator!=

(

const CliqueGraph &

from

)

const

checks whether two clique graphs are different

operator!=() [4/4]

INLINE bool gum::NodeGraphPart::operator!= ( const NodeGraphPart &  p ) const

inherited

check whether two NodeGraphParts contain different nodes

Parameters

p	the NodeGraphPart to be compared with "this"

Definition at line 338 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

{ return !operator==(p); }

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operator=()

CliqueGraph& gum::CliqueGraph::operator=

(

const CliqueGraph &

from

)

copy operator

operator==() [1/4]

INLINE bool gum::EdgeGraphPart::operator== ( const EdgeGraphPart &  p ) const

inherited

tests whether two EdgeGraphParts contain the same edges

Parameters

p	the EdgeGraphPart that we compare with this

Definition at line 103 of file edgeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                                    {
    return _edges_ == p._edges_;
  }

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operator==() [2/4]

INLINE bool gum::UndiGraph::operator== ( const UndiGraph &  g ) const

inherited

tests whether two UndiGraphs are identical (same nodes, same edges)

Parameters

g	the UndiGraph with which "this" is compared

Definition at line 65 of file undiGraph_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                            {
    return EdgeGraphPart::operator==(p) && NodeGraphPart::operator==(p);
  }

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operator==() [3/4]

bool gum::CliqueGraph::operator==

(

const CliqueGraph &

from

)

const

checks whether two clique graphs are equal

operator==() [4/4]

INLINE bool gum::NodeGraphPart::operator== ( const NodeGraphPart &  p ) const

inherited

check whether two NodeGraphParts contain the same nodes

Parameters

p	the NodeGraphPart to be compared with "this"

Definition at line 324 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                                    {
    if (_boundVal_ != p._boundVal_) return false;

    if (_holes_)
      if (p._holes_)
        return (*_holes_ == *p._holes_);
      else
        return false;
    else if (p._holes_)
      return false;

    return true;
  }

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partialUndiGraph()

UndiGraph gum::UndiGraph::partialUndiGraph ( NodeSet  nodes )

virtualinherited

returns the partial graph formed by the nodes given in parameter

Definition at line 139 of file undiGraph.cpp.

                                                     {
    UndiGraph partialGraph;

    for (const auto node: nodes) {
      partialGraph.addNodeWithId(node);

      for (const auto nei: neighbours(node))
        if (nodes.contains(nei) && partialGraph.existsNode(nei)) partialGraph.addEdge(node, nei);
    }

    return partialGraph;
  }

populateNodes()

void gum::NodeGraphPart::populateNodes ( const NodeGraphPart &  s )

inherited

populateNodes clears *this and fills it with the same nodes as "s"

populateNodes should basically be the preferred way to insert nodes with IDs not selected by the internal idFactory.

Parameters

s	the NodeGraphPart to be copied

Definition at line 63 of file nodeGraphPart.cpp.

References gum::Set< Key, Alloc >::emplace().

                                                          {
    clear();   // "virtual" flush of the nodes set
    _holes_size_          = s._holes_size_;
    _holes_resize_policy_ = s._holes_resize_policy_;

    if (s._holes_) _holes_ = new NodeSet(*s._holes_);

    _boundVal_ = s._boundVal_;

    _updateEndIteratorSafe_();
  }

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populateNodesFromProperty()

template<typename T >

void gum::NodeGraphPart::populateNodesFromProperty ( const NodeProperty< T > &  h )

inherited

populateNodesFromProperty clears *this and fills it with the keys of "h"

populateNodes should basically be the preferred way to insert nodes with IDs not selected by the internal idFactory.

separator() [1/2]

const NodeSet& gum::CliqueGraph::separator

(

const Edge &

edge

)

const

returns the separator included in a given edge

Exceptions

NotFound

exception is thrown if the edge does not belong to the clique graph

separator() [2/2]

const NodeSet& gum::CliqueGraph::separator	(	const NodeId	clique1,
		const NodeId	clique
	)		const

returns the separator included in an edge specified by its extremities

Exceptions

NotFound

exception is thrown if the edge does not belong to the clique graph

setClique()

virtual void gum::CliqueGraph::setClique ( const NodeId  idClique, const NodeSet &  new_clique  )

virtual

changes the set of nodes included into a given clique and returns the new set

Exceptions

NotFound

exception is thrown if idClique is not a clique of the clique graph

size()

INLINE Size gum::NodeGraphPart::size ( ) const

inherited

alias for sizeNodes

Definition at line 269 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

{ return sizeNodes(); }

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sizeEdges()

INLINE Size gum::EdgeGraphPart::sizeEdges ( ) const

inherited

indicates the number of edges stored within the EdgeGraphPart

Definition at line 36 of file edgeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

{ return _edges_.size(); }

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sizeNodes()

INLINE Size gum::NodeGraphPart::sizeNodes ( ) const

inherited

returns the number of nodes in the NodeGraphPart

Definition at line 265 of file nodeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                             {
    return (_holes_) ? (_boundVal_ - _holes_->size()) : _boundVal_;
  }

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toDot()

virtual std::string gum::CliqueGraph::toDot ( ) const

virtual

friendly displays the content of the CliqueGraph in DOT format

Reimplemented from gum::UndiGraph.

toString()

virtual std::string gum::CliqueGraph::toString ( ) const

virtual

friendly displays the content of the CliqueGraph

Reimplemented from gum::NodeGraphPart.

undirectedPath()

const std::vector< NodeId > gum::EdgeGraphPart::undirectedPath ( const NodeId  node1, const NodeId  node2  ) const

inherited

returns a possible path from node1 to node2 in the edge set

Parameters

node1	the id from which the path begins
node2	the id to which the path ends

Exceptions

NotFound

exception is raised if no path can be found between the two nodes

Definition at line 125 of file edgeGraphPart.cpp.

References gum::Set< Key, Alloc >::emplace().

                                                                                   {
    // not recursive version => use a FIFO for simulating the recursion
    List< NodeId > nodeFIFO;
    nodeFIFO.pushBack(n2);

    // mark[node] = predecessor if visited, else mark[node] does not exist
    NodeProperty< NodeId > mark;
    mark.insert(n2, n2);

    NodeId current;

    while (!nodeFIFO.empty()) {
      current = nodeFIFO.front();
      nodeFIFO.popFront();

      // check the neighbour
      for (const auto new_one: neighbours(current)) {
        if (mark.exists(new_one))   // if this node is already marked, stop
          continue;

        mark.insert(new_one, current);

        if (new_one == n1) {
          std::vector< NodeId > v;

          for (current = n1; current != n2; current = mark[current])
            v.push_back(current);

          v.push_back(n2);

          return v;
        }

        nodeFIFO.pushBack(new_one);
      }
    }

    GUM_ERROR(NotFound, "no path found")
  }

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unvirtualizedEraseNeighbours()

INLINE void gum::EdgeGraphPart::unvirtualizedEraseNeighbours ( const NodeId  id )

inherited

same function as eraseNeighbours but without any virtual call to an erase

Parameters

id	the node whose ingoing arcs will be removed

Definition at line 92 of file edgeGraphPart_inl.h.

References gum::Set< Key, Alloc >::emplace().

                                                                         {
    if (_neighbours_.exists(id)) {
      const NodeSet& set = neighbours(id);

      for (auto iter = set.beginSafe(); iter != set.endSafe();
           ++iter) {   // safe iterator needed here
        EdgeGraphPart::eraseEdge(Edge(*iter, id));
      }
    }
  }

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Member Data Documentation

_cliques_

NodeProperty< NodeSet > gum::CliqueGraph::_cliques_

private

the set of nodes contained into the cliques

Definition at line 240 of file cliqueGraph.h.

_separators_

EdgeProperty< NodeSet > gum::CliqueGraph::_separators_

private

the set of nodes contained into the separators

Definition at line 243 of file cliqueGraph.h.

onEdgeAdded

Signaler2< NodeId, NodeId > gum::EdgeGraphPart::onEdgeAdded

inherited

Definition at line 78 of file edgeGraphPart.h.

onEdgeDeleted

Signaler2< NodeId, NodeId > gum::EdgeGraphPart::onEdgeDeleted

inherited

Definition at line 79 of file edgeGraphPart.h.

onNodeAdded

Signaler1< NodeId > gum::NodeGraphPart::onNodeAdded

inherited

Definition at line 271 of file nodeGraphPart.h.

onNodeDeleted

Signaler1< NodeId > gum::NodeGraphPart::onNodeDeleted

inherited

Definition at line 272 of file nodeGraphPart.h.

---

The documentation for this class was generated from the following file:

• agrum/tools/graphs/cliqueGraph.h